PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0641
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 278aa    MW: 31736.2 Da    PI: 6.8087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0641genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-092671346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++  a + +G +   +W ++a++++ g+t  +++  ++ 
      Gh_D04G0641 26 YWTKEENKRFESALAIYGEDvpdRWMKVAAMIP-GKTVSDVIKQYRE 71
                     5********************************.*******999986 PP

2Myb_DNA-binding431e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
      Gh_D04G0641 126 PWTEEEHRRFLMGLMKYGKGDWRNISRNLVVSKTPTQVASHAQKY 170
                      8*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.9442277IPR017884SANT domain
SMARTSM007173.0E-82375IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-52572IPR009057Homeodomain-like
SuperFamilySSF466893.38E-122581IPR009057Homeodomain-like
PfamPF002492.6E-82771IPR001005SANT/Myb domain
CDDcd001673.88E-82772No hitNo description
PROSITE profilePS5129420.291119175IPR017930Myb domain
SuperFamilySSF466892.21E-15121174IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-18122174IPR006447Myb domain, plants
SMARTSM007171.1E-11123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-11123175IPR009057Homeodomain-like
PfamPF002493.3E-11126170IPR001005SANT/Myb domain
CDDcd001671.28E-9126171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
METFFATSFM SNSDWFDQED ISRNPYWTKE ENKRFESALA IYGEDVPDRW MKVAAMIPGK  60
TVSDVIKQYR ELEEDVFDIE SGRIPIPGYL TSSFTFEMVD NHDFEPYRKR SNGAKGPDHE  120
RKKGVPWTEE EHRRFLMGLM KYGKGDWRNI SRNLVVSKTP TQVASHAQKY FQRQLSGGKD  180
KKRPSIHDIT TLSITTPNTG FSDNQSDHVL ALHQKLSSTL QKADHNNDAS AMALNSSQEG  240
WFTSSQQYLT ASNGLRFEGQ NLYGNGFHGA QPPQSSVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1627921176RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.249580.0boll
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5850428e-59JX585042.1 Gossypium hirsutum clone NBRI_GE18496 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460778.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H72e-82DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D2TK880.0A0A0D2TK88_G
STRINGGLYMA02G42140.31e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-96MYB family protein